Refereed Publications by Yuehua Cui

2008
  1. Cui, Y.H., G.L. Kang, K.L. Sun, R. Romero, M. Qian, and W.J. Fu. (2008) Gene-centric Genomewide Association Study via Entropy. Genetics 179(1) (in press) [PDF]
  2. Ma, C-X., Q. Yu, A. Berg, D. Drost, E. Novaes, G. Fu, J.S. Yap, A. Tan, M. Kirst, Y.H. Cui and R.L. Wu. (2008) A statistical model for testing the pleiotropic control of phenotypic plasticity for a count trait. Genetics 179(1) (in press)
  3. Cui, Y.H., S.Y. Li, and G.X. Li. (2008) Functional Mapping Imprinted Quantitative Trait Loci Underlying Developmental Characteristics. Theoretical Biology and Medical Modeling 6:5. [Journal link]
  4. Cui, Y.H., R.L. Wu, G. Casella, and J. Zhu. (2008) Nonparametric Functional Mapping Quantitative Trait Loci Underlying Programmed Cell Death. Statistical Applications in Genetics and Molecular Biology Vol. 7: Iss. 1, Article 4. [PDF]
  5. Kang G., W. Yue, J. Zhang, Y.H. Cui, Y. Zuo and D. Zhang. (2008) An entropy-based approach for testing genetic epistasis underlying complex diseases. Journal of Theoretical Biology 250: 362-374.
2007
  1. Cintia, M.C., S, Wu, Y. Li, B. Hunter, R.A. Dante, Y.H. Cui, R.L. Wu, and B.A. Larkins. (2007) Identification of Quantitative Trait Loci that Affect Endoreduplication in maize Endosperm. Theoretical and Applied Genetics 115:1147–1162.
  2. Cui, Y.H., W. Fu, K.L. Sun, R. Romero, and R. Wu. (2007) Mapping Nucleotide Sequences That Encode Complex Binary Disease Traits with HapMap. Current Genomics 8(5): 307-322 [Journal link].
  3. Wu, J.S., B. Zhang, Y.H. Cui, W. Zhao, L. Xu, Huang, Y. Zeng, and R. Wu. (2007) Genetic Determination of Developmental Instability: Design, Model and Algorithm. Genetics 176: 1187-1196.
  4. Cui, Y.H., J.M. Cheverud and R.L. Wu. (2007) A Statistical Model for Dissecting Genomic Imprinting through Genetic Mapping. Genetica 130: 227-239.
  5. Rice, L., R. Handayani, Y.H. Cui, T. Medrano, Von G. Samedi, H.V. Baker, N.J. Szabo, and K. Shiverick. (2007) Effects of Soy Isoflavone Concentrate on Gene Expression Profiles in LNCaP Human Prostate Cancer Cells. Journal of Nutrition 137: 964-972.
  6. Wu, R.L., W. Hou, Y.H. Cui, H.Y. Li, T. Liu, S. Wu, C-X. Ma, and Y. Zeng. (2007) Modeling the genetic architecture of complex traits with molecular markers. Recent Patent on Nanotechnology 1:41-49. (invited review paper)
  7. Cui, Y.H. (2007) A Statistical Framework for Genome-wide Scanning and Testing Imprinted Quantitative Trait Loci. Journal of Theoretical Biology 244: 115-126 [PDF]
2006
  1. Cui, Y.H., D.-Y. Kim, and J. Zhu. (2006) On the generalized Poisson regression mixture model for mapping quantitative trait loci with count data. Genetics 174(4): 2159–2172. [PDF]
  2. Cui, Y.H., J. Zhu, and R.L. Wu. (2006) Functional Mapping for Genetic Control of Programmed Cell Death. Physiological Genomics 25: 458-469 [PDF]
  3. Cui, Y.H., J. G. Wu, C.H. Shi, J. Zhu, R.C. Littell and R.L. Wu. (2006) Modeling Epistatic Effects of Embryo and Endosperm QTL on Seed Quality Traits. Genetical Research 87: 61-71 [PDF]
  4. Cui, Y.H., Q. Lu, J.M. Cheverud, R.C. Littell and R.L. Wu. (2006) Model for Mapping Imprinted Quantitative Trait loci in an inbred F2 design. Genomics 87: 543-551 [PDF] [R Code for linkage scan] [R Code for imprinting test].
  5. Handayani, R., L. Rice, Y.H. Cui, T. Medrano, V.G. Samedi, H. Baker, N.J. Szabo and K. Shiverick. (2006) Soy Isoflavones Alter Expression of Genes Associated with Cancer Progression, Including IL-8, in Androgen-Independent PC-3 Human Prostate Cancer Cells. Journal of Nutrition 136: 75-82.
2005
  1. Cui, Y.H. and R.L. Wu. (2005) Mapping Genome-Genome Epistasis: A High-dimensional Model. Bioinformatics 21(10): 2447-2455 [PDF]
  2. Sun, K.L., Y.H. Cui and B. Hauser. (2005) Changes in Gene Expression During Ovule Abortion in Arabidopsis. Planta 222: 632-642.
  3. Cui, Y.H. and R. L. Wu. (2005) A Statistical Model for Characterizing Epistatic Control of Triploid Endosperm Triggered by Maternal and Offspring QTL. Genetical Research 86: 65-76 [PDF]
2004
  1. Cui, Y. H., G. Casella and R.L. Wu. (2004) Mapping Quantitative Trait Loci Interactions From the Maternal and Offspring Genomes. Genetics, 167: 1017-1026 [PDF]
  2. Lu, Q., Y.H. Cui and R.L. Wu. (2004) A Multilocus Likelihood Approach to Joint Modeling of Linkage, Parental Diplotype and Gene Order in a Full-sib Family. BMC Genetics 5: 20.
2000 & earlier (in Chinese)
  1. Sun, K.L., M. Wang and Y.H. Cui. (2000) Study on the Primary Vascular System of the Seedling of Nelumbo Nucifera Gaertn. Acta Botanica Yunnanica, 22(3): 286-290
  2. Cui, Y.H., M. Wang and K.L. Sun. (1999) Study on the Heterogeneity of Endosperm Cell Development in Eucommia ulmoides Oliv. Journal of Agricultural Biotechnology 7(1): 89-93.
  3. Cui, Y.H., M. Wang and K.L. Sun. (1999) Morphology of Gutta-containing Cells in Eucommia ulmoides Oliv. Chinese Bulletin of Botany 16(4): 439-443.
  4. Wang, M., Y.H. Cui and K.L. Sun. (1999) Study on the Programmed Cell Death in the Process of Endosperm Degeneration in Eucommia ulmoides Oliv. Bulletin of Botanical Research 19(4): 401-406.
  5. Zhao, Y.J., W. Zhang, G. C. Li, T. Wang and Y.H. Cui. (1998) Genetic Studies on Several Morphological Index of Columnar Apple Trees. Journal of China Agricultural University Vol. 3, supplement: 96-98.
Last Modified August, 2007