Heng Wang

m-HMM

This is the R software for the m-HMM, the mixture hidden Markov model used to detect copy number variation using next generation sequencing data.

Requirements:

• R 3.0.0 or later.

Author:

• Heng Wang

Contact:

• hengwang@msu.edu

R package:

• Windows system
• Linux system

Manual:

• Users manual

Data:

• An example data set for running m-HMM

Citation:

• Heng Wang, Dan Nettleton and Kai Ying (2014). Copy Number Variation Detection Using Next Generation Sequencing Read Counts, BMC Bioinformatics 2014, 15:109.