**Selected peer-referred journal articles** (*corresponding author; __Trainee__)

1.
__Gao, B.__^{#}, __X. Liu__^{#}, H.Z. Li and **Y.H. Cui***. (2019) Integrative
analysis of genetical genomics data incorporating network structures. *Biometrics* *Methodology* https://doi.org/10.1111/biom.13072
[code] (^{# }The first two authors
contributed equally to this work)

__Liu, X.__, P-S. Zhong and**Y.H. Cui***. (2019) Joint test of parametric and nonparametric effects in partial linear models for gene-environment interaction.*Statistica**Sinica*(in press)__Wu, C.__, P-S. Zhong and**Y.H. Cui***. (2018) Additive varying-coefficient model for nonlinear gene-environment interactions.*Statistical Applications in Genetics and Molecular Biology*

4. __Wang, H.__, P-S. Zhong*
and **Y.H. Cui**. (2018) Empirical
likelihood ratio tests for coefficients in high dimensional heteroscedastic
linear models. *Statistica** Sinica
*28:
2409-2433.

__Wang, H.L.__, P-S. Zhong*,**Y.H. Cui**and Y. Li. (2018) Unified empirical likelihood ratio tests for functional concurrent linear models and the phase transition from sparse to dense functional data. [Supplemental files]*Journal of the Royal Statistical Society B*80(2): 343-364.

6. Wu, C., Y. Jiang, J. Ren, **Y.H. Cui** and S. Ma. (2018) Dissecting
gene-environment interactions: a penalized robust approach accounting for
hierarchical structures. *Statistics in
Medicine* 37(3): 437-456.

**Cui, Y.H.*** and H. Yang. (2017) Dissecting genomic imprinting and genetic conflict from a game theory prospective: Comment on: “Epigenetic game theory: How to compute the epigenetic control of maternal-to-zygotic transition” by Qian Wang et al.*Physics of Life Reviews*20: 161-163.

8. __Li, G.__
and **Y.H. Cui***. (2016) Assessing
statistical significance in variance components linkage analysis: a theoretical
justification. *Journal of Statistical
Planning and Inference *178: 70-83 [PDF]

9. __Liu, X.__,
**Y.H. Cui*** and R. Li. (2016) Partial linear varying multi-index coefficient
model for integrative gene-environment interactions. [Supplemental file] *Statistica**
Sinica* 26: 1037-1060

10. Li, G., **Y.H.
Cui** and H. Zhao. (2015) An empirical Bayes risk
prediction model for multiple traits using sequencing data. *Statistical Applications in Genetics and Molecular
Biology* 14(6):
551-73.

- Wu, C., X. Shi,
**Y.H. Cui**and S.G. Ma. (2015) A penalized robust semi-parametric approach for gene-environment interactions.*Statistics in Medicine*34(30):4016-30. __Gao, B.__and**Y.H. Cui***. (2015) Learning directed acyclic graphical structures with genetical genomics data.*Bioinformatics*31:3953-3960.- Wu, C.,
**Y.H. Cui**and S.G. Ma. (2014) Integrative analysis of gene-environment interactions under a multi-response partially linear varying coefficient model.*Statistics in Medicine*33: 4988-4998. - Dai, H.Y., T. Srivastava, and
**Y.H. Cui**. (2014) A modified generalized fisher method for combining probabilities from dependent tests.*Frontiers in Genetics*5:23. - Kim, D-Y.,
**Y.H. Cui**and O. Zhao. (2013) Asymptotic test of mixture model and its applications to QTL interval mapping.*Journal of Statistical Planning and Inference*143: 1320-1329.

16. Geu-Flores,
F., N.H. Sherden, V. Courdavault,
V. Burlat, W.S. Glenn, __C. Wu__, E. Nims, **Y.H. Cui**, and S.E. O’Connor. (2012) An
alternative route to cyclic terpenes by reductive cyclization in iridoid
biosynthesis. *Nature* 492: 138–142
doi:10.1038/nature11692

__Li, S.Y.__and**Y.H. Cui***. (2012) Gene-centric gene-gene interaction: a model-based kernel machine method.*Annals of Applied Statistics*[ PDF] 6(3): 1134-1161.__Li, S.Y.__, B. Williams and**Y.H. Cui***. (2011) A combined p-value approach to infer pathway regulations in eQTL mapping.*Statistics and Its Interface*4(3): 389-402 [PDF] (invited)__Ma, S.J.__, L.J. Yang, R. Romero, and**Y.H. Cui***. (2011) Varying coefficient model for gene-environment interaction: a non-linear look.*Bioinformatics*27(15): 2119-2126.__Li, G.X.__and**Y.H. Cui***. (2010) A general statistical framework for dissecting parent-of-origin effects underlying triploid endosperm traits in flowering plants.*Annals of Applied Statistics*4(3): 1214-1233. [PDF]|[Link to the Journal].__Li, S.Y.__, Q. Lu, W. Fu, R. Romero and**Y.H. Cui***. (2009) A regularized regression approach for dissecting genetic conflicts that increase disease risk in pregnancy.*Statistical Applications in Genetics and Molecular Biology*Vol. 8 : Iss. 1, Article 45. [PubMed]**Cui, Y.H.*** and__W.Z. Yang__. (2009) Zero inflated generalized poisson regression mixture model for mapping quantitative trait loci underlying count trait with many zeros.*Journal of Theoretical Biology*256: 276-285 [PubMed].**Cui, Y.H.***,__G.L. Kang__, K.L. Sun, R. Romero, M. Qian, and W.J. Fu. (2008) Gene-centric genomewide association study via entropy.*Genetics*179: 637-650 [Link]**|**[ PubMed]. (This work was highlighted in*Nature Reviews Genetics*)**Cui, Y.H.***, J.M. Cheverud and R.L. Wu. (2007) A statistical model for dissecting genomic imprinting through genetic mapping.*Genetica*130: 227-239 [PubMed].**Cui, Y.H.*** (2007) A statistical framework for genome-wide scanning and testing imprinted quantitative trait loci.*Journal of Theoretical Biology*244: 115-126 [PubMed].**Cui, Y.H.***, D.-Y. Kim, and J. Zhu. (2006) On the generalized Poisson regression mixture model for mapping quantitative trait loci with count data.*Genetics*174(4): 2159-2172. [PubMed].**Cui, Y.H.**, J. Zhu, and R.L. Wu. (2006) Functional mapping for genetic control of programmed cell death.*Physiological Genomics*25: 458-469 [PubMed].**Cui, Y.H.**and R.L. Wu. (2005) Mapping genome-genome epistasis: A high-dimensional model.*Bioinformatics*21(10): 2447-2455 [PubMed].**Cui, Y. H.**, G. Casella and R.L. Wu. (2004) Mapping quantitative trait loci interactions from the maternal and offspring genomes.*Genetics*, 167: 1017-1026 [PubMed].

**Research Highlight **

- Our work
on Gene-centric genetic association study was highlighted in
*Nature Reviews Genetics*Vol. 9 No. 6 (2008).

*Last Modified in 2018*